STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pxpALactam utilization protein LamB; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (257 aa)    
Predicted Functional Partners:
AOP54506.1
Allophanate hydrolase 2 subunit 2.
  
 0.995
AOP54503.1
Hypothetical protein; FIG038418; clustering with LamB.
    0.972
AOP54505.1
Hypothetical protein; Possibly connected to lactam utilization and allophanate hydrolase; Belongs to the D-glutamate cyclase family.
    0.940
AOP54507.1
Urea carboxylase without Allophanate hydrolase 2 domains.
 
    0.874
AOP55050.1
Putative MEMBRANE PROTEIN.
      0.637
AOP54508.1
Thiol peroxidase, Bcp-type.
       0.555
AOP54502.1
Transcriptional regulator, GntR family.
       0.539
AOP52518.1
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
  
    0.482
AOP51981.1
Manganese transport protein MntH.
  
    0.480
AOP52081.1
Manganese transport protein MntH.
  
    0.480
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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