STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP54611.1Flp pilus assembly protein TadB. (309 aa)    
Predicted Functional Partners:
AOP54610.1
Type II secretion system protein E.
  
 0.981
AOP54612.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
  
 0.980
AOP54614.1
Putative membrane protein.
 
  
 0.957
AOP54613.1
Hypothetical protein.
 
     0.940
AOP54615.1
Hypothetical protein.
 
     0.931
AOP54596.1
Type II secretion system protein E.
 
  
 0.899
AOP53240.1
Hypothetical protein; FIG00390190.
 
  
 0.885
AOP53239.1
Hypothetical protein; FIG00448427.
 
    0.830
AOP53238.1
Excisionase/Xis, DNA-binding.
 
     0.777
AOP53349.1
Hypothetical protein.
  
     0.732
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.