STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP54817.1Phytoene dehydrogenase. (528 aa)    
Predicted Functional Partners:
AOP54818.1
Phytoene synthase.
  
 0.998
AOP54809.1
Octaprenyl diphosphate synthase; Dimethylallyltransferase; (2E,6E)-farnesyl diphosphate synthase; Geranylgeranyl diphosphate synthase.
 
  
 0.810
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.797
AOP54819.1
Nucleoside-diphosphate-sugar epimerase.
 
   
 0.704
AOP54815.1
Deoxyribodipyrimidine photolyase.
 
  
 0.669
AOP54064.1
Geranylgeranyl diphosphate synthase.
  
  
 0.588
AOP54807.1
Transcriptional regulator, MarR family.
 
   
 0.580
AOP54823.1
Nucleoside-diphosphate-sugar epimerase.
 
   
 0.558
AOP54814.1
Tryptophan-rich sensory protein.
 
  
 0.554
AOP54813.1
Gamma-carotene desaturase, putative.
     
 0.497
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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