STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP54856.1Rrf2-linked NADH-flavin reductase. (216 aa)    
Predicted Functional Partners:
AOP54855.1
Permease of the drug/metabolite transporter (DMT) superfamily.
     0.988
AOP54854.1
Transcriptional regulator lysR family.
 
     0.679
AOP54857.1
Tetracycline resistance protein.
 
     0.642
AOP54853.1
Enoyl-CoA hydratase.
       0.571
AOP53032.1
Transcriptional regulator, HxlR family.
  
    0.501
AOP54852.1
Putative membrane protein.
       0.489
AOP55126.1
Short chain dehydrogenase.
 
    0.455
AOP54859.1
Potassium channel beta chain.
  
    0.441
AOP52521.1
Homoprotocatechuate 2,3-dioxygenase.
  
    0.433
AOP54880.1
Hypothetical protein.
  
    0.421
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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