STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP54924.1Hypothetical protein; FIG00447884. (302 aa)    
Predicted Functional Partners:
AOP54925.1
Cold shock protein CspC.
 
     0.871
AOP54923.1
Transporter, putative.
       0.789
AOP51729.1
Hypothetical protein; FIG187021.
  
     0.741
AOP53610.1
Hypothetical protein; FIG00447856.
  
     0.730
AOP54020.1
Hypothetical protein; FIG01121218.
  
     0.708
AOP52533.1
Xanthine/uracil/thiamine/ascorbate permease family protein.
      0.698
AOP52282.1
Uroporphyrinogen-III synthase; Response regulator.
  
     0.620
AOP52771.1
Hypothetical protein; Putative, related to broad specificity phosphatases COG0406.
 
     0.620
AOP51726.1
Possibly RNA-binding protein.
  
     0.593
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.576
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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