STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP55027.1Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (451 aa)    
Predicted Functional Partners:
AOP53544.1
Aromatic-L-amino-acid decarboxylase.
 
 0.946
AOP53645.1
Biotin synthase.
 
      0.728
AOP54897.1
Succinate-semialdehyde dehydrogenase [NAD(P)+].
 
 0.680
AOP55391.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.680
AOP55028.1
Hypothetical protein.
       0.563
AOP55026.1
Hypothetical protein.
       0.516
AOP54585.1
Cys-tRNA(Pro) deacylase YbaK.
 
   
 0.511
AOP55370.1
3-hydroxyisobutyrate dehydrogenase.
    
  0.510
AOP54420.1
5-aminopentanamidase.
  
  
 0.509
AOP52510.1
Proline dehydrogenase (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase.
  
 
 0.508
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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