STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP55044.1Transcriptional regulator, PadR family. (185 aa)    
Predicted Functional Partners:
AOP55045.1
Ubiquinone biosynthesis monooxygenase UbiB.
 
     0.911
AOP53588.1
TCDB 3.A.1.8.1; TCDB 3.A.1.8.1; Molybdenum transport ATP-binding protein ModC.
 
     0.473
AOP54277.1
Membrane protein related to metalloendopeptidase.
 
     0.461
AOP55043.1
Dihydrofolate reductase.
       0.456
AOP52792.1
ABC transporter ATP-binding protein.
 
    0.417
AOP55042.1
Transcriptional regulator, HxlR family.
  
    0.414
AOP53613.1
Transcriptional regulator, MerR family.
 
     0.411
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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