STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP55192.1C4-dicarboxylate transporter/malic acid transport protein. (338 aa)    
Predicted Functional Partners:
AOP55193.1
Hypothetical protein.
       0.773
AOP55519.1
Hypothetical protein.
 
     0.627
AOP53618.1
Hypothetical protein.
 
     0.588
AOP51840.1
Hypothetical protein.
 
     0.544
AOP55179.1
Molybdopterin-guanine dinucleotide biosynthesis protein MobA.
 
     0.508
AOP53640.1
Hypothetical protein.
 
     0.490
AOP52203.1
ATP-dependent DNA helicase RecG-related protein.
 
     0.481
AOP55495.1
Formate dehydrogenase O beta subunit.
 
     0.469
AOP51745.1
Putative uroporphyrin-III c-methyltransferase.
     0.451
AOP54827.1
Putative MFS transporter.
 
     0.420
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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