STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP55238.1Integral membrane protein. (328 aa)    
Predicted Functional Partners:
AOP53596.1
Glycosyltransferase.
     0.876
AOP55239.1
Putative sensor kinase.
       0.773
AOP55237.1
Hypothetical protein.
       0.586
AOP55240.1
Hypothetical protein.
       0.568
AOP55137.1
Hypothetical protein; FIG00449467.
  
 0.553
AOP55367.1
Hypothetical protein; FIG00447800.
 
     0.543
rpmF
LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.
 
     0.539
AOP53573.1
Alpha/beta hydrolase fold.
  
    0.534
AOP53528.1
Glycosyl transferase, group 1.
  
     0.525
AOP53883.1
Hypothetical protein.
  
     0.518
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.