STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP55274.1RNA polymerase sigma factor RpoE. (189 aa)    
Predicted Functional Partners:
AOP55273.1
Hypothetical protein.
       0.854
AOP55272.1
Hypothetical protein.
       0.773
AOP55275.1
Alkaline shock protein 23.
 
     0.771
AOP55277.1
Hypothetical protein.
 
     0.648
AOP55276.1
Hypothetical protein.
       0.593
AOP55278.1
Hypothetical protein.
       0.593
AOP55279.1
Hypothetical protein.
       0.593
AOP54239.1
Peptidase, M16 family; FIG007959; Belongs to the peptidase M16 family.
 
    0.555
AOP53978.1
DNA primase.
 
 
 0.545
AOP53426.1
Hypothetical protein; FIG00447877.
  
 
 0.528
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.