STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP55277.1Hypothetical protein. (122 aa)    
Predicted Functional Partners:
AOP55275.1
Alkaline shock protein 23.
 
     0.916
AOP55276.1
Hypothetical protein.
       0.854
AOP55278.1
Hypothetical protein.
       0.854
AOP55279.1
Hypothetical protein.
       0.854
AOP55274.1
RNA polymerase sigma factor RpoE.
 
     0.648
AOP54315.1
Dihydroxyacetone kinase family protein.
  
  
 0.530
AOP54464.1
Mobile element protein.
  
     0.489
AOP52294.1
Mobile element protein.
  
     0.486
AOP53627.1
Mobile element protein.
  
     0.486
AOP52229.1
Hypothetical protein.
  
     0.483
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.