STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP55301.1Hypothetical protein; FIG00996530. (232 aa)    
Predicted Functional Partners:
AOP52642.1
Zn-dependent hydrolase, including glyoxylase; FIG146518.
     0.751
AOP54666.1
NAD(P)HX dehydratase.
  
 0.669
AOP52641.1
Hypothetical protein; FIG00996530.
 
     0.636
AOP55300.1
Cardiolipin synthetase; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
   
   0.545
AOP53895.1
16S rRNA (cytosine(967)-C(5))-methyltransferase.
  
 
 0.529
AOP52527.1
Putative serine protease.
    
  0.457
AOP54997.1
Uncharacterized protein; Rv0487/MT0505 clustered with mycothiol biosynthesis gene.
 
     0.418
AOP53401.1
Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
  0.407
deaD
DEAD-box ATP-dependent RNA helicase CshA; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
   
  0.407
AOP54777.1
ATP-dependent RNA helicase.
   
  0.407
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.