STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP55438.1Autotransporter adhesin. (659 aa)    
Predicted Functional Partners:
AOP55436.1
Sortase A, LPXTG specific.
 
   
 0.955
AOP55437.1
Fimbrial subunit type 2 precursor.
 
    
0.895
AOP55439.1
Hypothetical protein.
       0.496
AOP55513.1
Hypothetical protein.
 
     0.464
AOP54807.1
Transcriptional regulator, MarR family.
 
     0.456
AOP55514.1
Hypothetical protein.
 
     0.442
AOP55440.1
ABC transporter, ATP-binding protein.
 
     0.420
AOP54424.1
Hypothetical protein.
  
  
 0.402
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.