OKJ81375.1 protein (Streptomyces sp. TSRI0107)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OKJ81375.1

AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)

Predicted Functional Partners:

OKJ81374.1

0.968

OKJ81373.1

0.874

OKJ81372.1

0.804

OKJ81378.1

0.793

OKJ83890.1

0.772

OKJ73553.1

0.755

OKJ90440.1

0.737

OKJ81376.1

0.730

OKJ81383.1

0.695

OKJ77409.1

0.641

Your Current Organism:

Streptomyces sp. TSRI0107

NCBI taxonomy Id: 1703942
Other names: S. sp. TSRI0107

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OKJ73553.1	OKJ81375.1	AMK31_32215	AMK31_23505	Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
OKJ73553.1	OKJ81378.1	AMK31_32215	AMK31_23525	Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
OKJ73553.1	OKJ81383.1	AMK31_32215	AMK31_23550	Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
OKJ73553.1	OKJ90440.1	AMK31_32215	AMK31_01450	Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.	0.865
OKJ77409.1	OKJ81375.1	AMK31_27415	AMK31_23505	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
OKJ77409.1	OKJ81378.1	AMK31_27415	AMK31_23525	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
OKJ77409.1	OKJ81383.1	AMK31_27415	AMK31_23550	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
OKJ77409.1	OKJ90440.1	AMK31_27415	AMK31_01450	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.	0.618
OKJ81372.1	OKJ81373.1	AMK31_23490	AMK31_23495	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OKJ81372.1	OKJ81374.1	AMK31_23490	AMK31_23500	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
OKJ81372.1	OKJ81375.1	AMK31_23490	AMK31_23505	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
OKJ81372.1	OKJ81376.1	AMK31_23490	AMK31_23510	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
OKJ81372.1	OKJ81378.1	AMK31_23490	AMK31_23525	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
OKJ81372.1	OKJ81383.1	AMK31_23490	AMK31_23550	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
OKJ81373.1	OKJ81372.1	AMK31_23495	AMK31_23490	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.998
OKJ81373.1	OKJ81374.1	AMK31_23495	AMK31_23500	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
OKJ81373.1	OKJ81375.1	AMK31_23495	AMK31_23505	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
OKJ81373.1	OKJ81376.1	AMK31_23495	AMK31_23510	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
OKJ81373.1	OKJ81378.1	AMK31_23495	AMK31_23525	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
OKJ81373.1	OKJ81383.1	AMK31_23495	AMK31_23550	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661