STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapBHypothetical protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (226 aa)    
Predicted Functional Partners:
dapA
Hypothetical protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.993
KPK33597.1
Hypothetical protein; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily.
    
 0.937
KPK33097.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.801
KPK33539.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.650
KPK33291.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.650
KPK33086.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the diaminopimelate epimerase family.
 
   
 0.632
KPK33743.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.561
KPK32993.1
Collagenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.550
KPK32175.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
  
 0.492
Your Current Organism:
Chlamydiae bacterium SM2339
NCBI taxonomy Id: 1704235
Other names: C. bacterium SM23_39, Chlamydiae bacterium SM23_39
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