STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolBProtein TolB. (385 aa)    
Predicted Functional Partners:
pal
Outer membrane protein P6 precursor.
 
 0.996
ALJ56432.1
Von Willebrand factor type A domain protein.
  
  
 0.792
exbB
Biopolymer transport protein ExbB.
 
  
 0.786
icd
Isocitrate dehydrogenase [NADP].
  
    0.694
ALJ56227.1
Hypothetical protein.
       0.686
ALJ57021.1
Gram-negative bacterial tonB protein.
  
 
 0.673
lolE
Lipoprotein-releasing system transmembrane protein LolE.
  
  
 0.646
ALJ56954.1
Hypothetical protein.
  
  
 0.576
murJ
Putative peptidoglycan biosynthesis protein MurJ; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
  
     0.539
bamA
Outer membrane protein assembly factor BamA precursor.
  
  
 0.508
Your Current Organism:
Xiphinematobacter sp. Idaho
NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.