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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spiAType III secretion system outer membrane protein SpiA precursor. (642 aa)    
Predicted Functional Partners:
nolT
Nodulation protein NolT precursor.
 
 
 0.955
ALJ56895.1
Flagellar biosynthesis protein FliQ.
 
 
 0.926
fliR
Flagellar biosynthetic protein FliR.
 
 
 0.873
yscL
Yop proteins translocation protein L.
 
  
 0.821
fliP
Flagellar biosynthetic protein FliP precursor.
  
 
 0.793
ALJ56423.1
Hypothetical protein.
       0.773
ssaV
Secretion system apparatus protein SsaV.
  
 
 0.749
ALJ56420.1
Hypothetical protein.
  
  
 0.661
ALJ56422.1
Hypothetical protein.
       0.566
yscN
Putative ATP synthase YscN.
  
  
 0.469
Your Current Organism:
Xiphinematobacter sp. Idaho
NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape
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