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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssaVSecretion system apparatus protein SsaV. (698 aa)    
Predicted Functional Partners:
fliR
Flagellar biosynthetic protein FliR.
 
 
 0.970
fliP
Flagellar biosynthetic protein FliP precursor.
 
 
 0.966
nolT
Nodulation protein NolT precursor.
 
 
 0.914
yscU
Yop proteins translocation protein U.
 
 
 0.901
yscN
Putative ATP synthase YscN.
 
  
 0.900
ALJ56895.1
Flagellar biosynthesis protein FliQ.
  
 
 0.879
ALJ56420.1
Hypothetical protein.
  
  
 0.789
spiA
Type III secretion system outer membrane protein SpiA precursor.
  
 
 0.749
ALJ56897.1
Type III secretion system protein SpaO.
  
  
 0.694
yscL
Yop proteins translocation protein L.
  
  
 0.434
Your Current Organism:
Xiphinematobacter sp. Idaho
NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape
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