clpX protein (Xiphinematobacter sp. Idaho) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

clpX

ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family. (530 aa)

Predicted Functional Partners:

clpP

0.995

ftsH

0.759

atpD

0.700

recR

0.576

rluD

0.567

secD

0.525

ftsZ

0.473

murC

0.468

groL

0.458

rpoD

0.441

Your Current Organism:

Xiphinematobacter sp. Idaho

NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
atpD	clpX	AMD24_00302	AMD24_00387	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	0.700
atpD	groL	AMD24_00302	AMD24_00056	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	0.560
clpP	clpX	AMD24_00378	AMD24_00387	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	0.995
clpP	ftsH	AMD24_00378	AMD24_00534	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.410
clpP	groL	AMD24_00378	AMD24_00056	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	0.608
clpP	secD	AMD24_00378	AMD24_00082	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	Protein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	0.500
clpX	atpD	AMD24_00387	AMD24_00302	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.700
clpX	clpP	AMD24_00387	AMD24_00378	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	0.995
clpX	ftsH	AMD24_00387	AMD24_00534	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.759
clpX	ftsZ	AMD24_00387	AMD24_00359	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.	0.473
clpX	groL	AMD24_00387	AMD24_00056	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	0.458
clpX	murC	AMD24_00387	AMD24_00355	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurB family.	0.468
clpX	recR	AMD24_00387	AMD24_00388	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.576
clpX	rluD	AMD24_00387	AMD24_00386	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.567
clpX	rpoD	AMD24_00387	AMD24_00432	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.441
clpX	secD	AMD24_00387	AMD24_00082	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	Protein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	0.525
ftsH	clpP	AMD24_00534	AMD24_00378	ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	0.410
ftsH	clpX	AMD24_00534	AMD24_00387	ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	ATP-dependent Clp protease ATP-binding subunit ClpX; Belongs to the ClpX chaperone family.	0.759
ftsH	groL	AMD24_00534	AMD24_00056	ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	0.500
ftsH	murC	AMD24_00534	AMD24_00355	ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurB family.	0.429