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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ56692.1Colicin uptake protein TolQ. (207 aa)    
Predicted Functional Partners:
ALJ56691.1
Hypothetical protein.
  
 
 0.917
exbD
Biopolymer transport protein ExbD.
 
 
 0.837
ALJ57021.1
Gram-negative bacterial tonB protein.
 
 
 0.826
ALJ56690.1
Hypothetical protein.
       0.566
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.499
lptG
Lipopolysaccharide export system permease protein LptG.
  
     0.482
ALJ56708.1
Putative permease YjgP/YjgQ family protein.
  
     0.452
ALJ56693.1
Hypothetical protein.
       0.436
tolC
Outer membrane protein TolC precursor.
  
   
 0.413
Your Current Organism:
Xiphinematobacter sp. Idaho
NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape
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