STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptB_2Lipopolysaccharide export system ATP-binding protein LptB. (266 aa)    
Predicted Functional Partners:
ALJ56748.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livH
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
livF
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 
0.994
ALJ56606.1
Leu/Ile/Val-binding protein homolog 3 precursor.
 
 
 0.990
ALJ56775.1
Leu/Ile/Val-binding protein homolog 3 precursor.
 
 
 0.990
lolD
Lipoprotein-releasing system ATP-binding protein LolD.
 
   
0.882
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
  
    0.603
ALJ56747.1
Hypothetical protein.
       0.601
ALJ56744.1
Putative ABC transporter ATP-binding protein.
 
    
0.426
mlaE
Putative phospholipid ABC transporter permease protein MlaE; Belongs to the MlaE permease family.
      0.408
Your Current Organism:
Xiphinematobacter sp. Idaho
NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape
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