lolD protein (Xiphinematobacter sp. Idaho) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lolD

Lipoprotein-releasing system ATP-binding protein LolD. (220 aa)

Predicted Functional Partners:

lolE

0.998

lptB_2

0.882

pstB

0.857

mdtA

0.825

rsmA

0.646

tolC

0.600

pstC

0.577

mshA

0.574

pstA

0.567

pstS

0.566

Your Current Organism:

Xiphinematobacter sp. Idaho

NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lolD	lolE	AMD24_00622	AMD24_00458	Lipoprotein-releasing system ATP-binding protein LolD.	Lipoprotein-releasing system transmembrane protein LolE.	0.998
lolD	lptB_2	AMD24_00622	AMD24_00580	Lipoprotein-releasing system ATP-binding protein LolD.	Lipopolysaccharide export system ATP-binding protein LptB.	0.882
lolD	mdtA	AMD24_00622	AMD24_00546	Lipoprotein-releasing system ATP-binding protein LolD.	Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.825
lolD	mshA	AMD24_00622	AMD24_00624	Lipoprotein-releasing system ATP-binding protein LolD.	D-inositol 3-phosphate glycosyltransferase.	0.574
lolD	pstA	AMD24_00622	AMD24_00619	Lipoprotein-releasing system ATP-binding protein LolD.	Phosphate transport system permease protein PstA.	0.567
lolD	pstB	AMD24_00622	AMD24_00618	Lipoprotein-releasing system ATP-binding protein LolD.	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.857
lolD	pstC	AMD24_00622	AMD24_00620	Lipoprotein-releasing system ATP-binding protein LolD.	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.577
lolD	pstS	AMD24_00622	AMD24_00621	Lipoprotein-releasing system ATP-binding protein LolD.	Phosphate-binding protein PstS precursor; Belongs to the PstS family.	0.566
lolD	rsmA	AMD24_00622	AMD24_00344	Lipoprotein-releasing system ATP-binding protein LolD.	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.646
lolD	tolC	AMD24_00622	AMD24_00114	Lipoprotein-releasing system ATP-binding protein LolD.	Outer membrane protein TolC precursor.	0.600
lolE	lolD	AMD24_00458	AMD24_00622	Lipoprotein-releasing system transmembrane protein LolE.	Lipoprotein-releasing system ATP-binding protein LolD.	0.998
lptB_2	lolD	AMD24_00580	AMD24_00622	Lipopolysaccharide export system ATP-binding protein LptB.	Lipoprotein-releasing system ATP-binding protein LolD.	0.882
mdtA	lolD	AMD24_00546	AMD24_00622	Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Lipoprotein-releasing system ATP-binding protein LolD.	0.825
mdtA	tolC	AMD24_00546	AMD24_00114	Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Outer membrane protein TolC precursor.	0.948
mshA	lolD	AMD24_00624	AMD24_00622	D-inositol 3-phosphate glycosyltransferase.	Lipoprotein-releasing system ATP-binding protein LolD.	0.574
mshA	pstA	AMD24_00624	AMD24_00619	D-inositol 3-phosphate glycosyltransferase.	Phosphate transport system permease protein PstA.	0.407
mshA	pstB	AMD24_00624	AMD24_00618	D-inositol 3-phosphate glycosyltransferase.	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.407
mshA	pstC	AMD24_00624	AMD24_00620	D-inositol 3-phosphate glycosyltransferase.	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.407
mshA	pstS	AMD24_00624	AMD24_00621	D-inositol 3-phosphate glycosyltransferase.	Phosphate-binding protein PstS precursor; Belongs to the PstS family.	0.407
pstA	lolD	AMD24_00619	AMD24_00622	Phosphate transport system permease protein PstA.	Lipoprotein-releasing system ATP-binding protein LolD.	0.567