Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fliPFlagellar biosynthetic protein FliP precursor. (220 aa)    
Predicted Functional Partners:
fliR
Flagellar biosynthetic protein FliR.
 
 
 0.995
ALJ56895.1
Flagellar biosynthesis protein FliQ.
  
 
 0.983
nolT
Nodulation protein NolT precursor.
  
 
 0.974
ssaV
Secretion system apparatus protein SsaV.
 
 
 0.965
yscN
Putative ATP synthase YscN.
 
  
 0.963
yscU
Yop proteins translocation protein U.
 
 
 0.957
ALJ56897.1
Type III secretion system protein SpaO.
  
  
 0.921
spiA
Type III secretion system outer membrane protein SpiA precursor.
  
 
 0.870
yscL
Yop proteins translocation protein L.
  
  
 0.822
ALJ56898.1
Hypothetical protein.
       0.732
Your Current Organism:
Xiphinematobacter sp. Idaho
NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape
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