STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ56899.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
ALJ56897.1
Type III secretion system protein SpaO.
       0.773
ALJ56898.1
Hypothetical protein.
       0.773
yscN
Putative ATP synthase YscN.
       0.773
yscL
Yop proteins translocation protein L.
       0.773
fliP
Flagellar biosynthetic protein FliP precursor.
       0.732
ALJ56902.1
Hypothetical protein.
       0.671
nolT
Nodulation protein NolT precursor.
       0.671
ALJ56895.1
Flagellar biosynthesis protein FliQ.
       0.646
yscU
Yop proteins translocation protein U.
       0.528
fliR
Flagellar biosynthetic protein FliR.
       0.528
Your Current Organism:
Xiphinematobacter sp. Idaho
NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.