STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galE_3UDP-glucose 4-epimerase. (138 aa)    
Predicted Functional Partners:
galE_2
UDP-glucose 4-epimerase.
       0.773
lptD
LPS-assembly protein LptD.
       0.601
rfaF
ADP-heptose--LPS heptosyltransferase 2.
     
 0.469
tuaD
UDP-glucose 6-dehydrogenase TuaD.
  
  
 0.433
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurB family.
  
  
 0.422
Your Current Organism:
Xiphinematobacter sp. Idaho
NCBI taxonomy Id: 1704307
Other names: C. Xiphinematobacter sp. Idaho Grape, Candidatus Xiphinematobacter sp. Idaho Grape
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.