KOP68992.1 protein (Bacillus sp. FJAT18019) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KOP68992.1

Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)

Predicted Functional Partners:

KOP65199.1

0.924

KOP65200.1

0.911

KOP66739.1

0.761

KOP69040.1

0.742

KOP68749.1

0.742

KOP64049.1

0.685

KOP66804.1

0.679

KOP65578.1

0.675

KOP66244.1

0.666

KOP67720.1

0.658

Your Current Organism:

Bacillus sp. FJAT18019

NCBI taxonomy Id: 1705110
Other names: B. sp. FJAT-18019, Bacillus sp. FJAT-18019

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOP64049.1	KOP68992.1	AMS62_01415	AMS62_08035	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
KOP65199.1	KOP65200.1	AMS62_08025	AMS62_08030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
KOP65199.1	KOP68992.1	AMS62_08025	AMS62_08035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
KOP65200.1	KOP65199.1	AMS62_08030	AMS62_08025	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
KOP65200.1	KOP68992.1	AMS62_08030	AMS62_08035	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KOP65578.1	KOP66739.1	AMS62_10220	AMS62_16965	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
KOP65578.1	KOP66804.1	AMS62_10220	AMS62_17335	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
KOP65578.1	KOP67720.1	AMS62_10220	AMS62_22535	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KOP65578.1	KOP68749.1	AMS62_10220	AMS62_28545	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KOP65578.1	KOP68992.1	AMS62_10220	AMS62_08035	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
KOP65578.1	KOP69040.1	AMS62_10220	AMS62_10390	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KOP66244.1	KOP68749.1	AMS62_14060	AMS62_28545	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
KOP66244.1	KOP68992.1	AMS62_14060	AMS62_08035	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
KOP66244.1	KOP69040.1	AMS62_14060	AMS62_10390	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
KOP66739.1	KOP65578.1	AMS62_16965	AMS62_10220	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
KOP66739.1	KOP66804.1	AMS62_16965	AMS62_17335	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KOP66739.1	KOP68749.1	AMS62_16965	AMS62_28545	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KOP66739.1	KOP68992.1	AMS62_16965	AMS62_08035	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
KOP66739.1	KOP69040.1	AMS62_16965	AMS62_10390	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KOP66804.1	KOP65578.1	AMS62_17335	AMS62_10220	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757