STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ22_01763Glycolate oxidase subunit GlcD. (504 aa)    
Predicted Functional Partners:
AMQ22_01762
Hydrogenase MvhADGHdrABC CoB-CoM heterodisulfide reductase subunit B.
 
 0.979
gyaR
Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.863
AMQ22_02048
3-ketoacyl-(Acyl-carrier-protein) reductase.
  
 0.851
AMQ22_01969
Hydrogenase subunit EhbL.
   
 0.837
rpl4
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
  
 0.822
AMQ22_00410
Uncharacterized protein.
 
  
 0.820
AMQ22_02046
Catalase-related immune-responsive.
  
 0.816
APG08_00940
annotation not available
  
 
 0.807
AMQ22_02194
Ribose-phosphate pyrophosphokinase.
   
 0.804
AMQ22_00785
Tartronate semialdehyde reductase.
 
  
  0.793
Your Current Organism:
Methanofastidiosum methylthiophilus
NCBI taxonomy Id: 1705564
Other names: Arc I group archaeon ADurb1013_Bin02101, Arc I group archaeon ADurb1113_Bin01801, Arc I group archaeon ADurb1213_Bin02801, Arc I group archaeon B03fssc0709_Meth_Bin005, Arc I group archaeon B15fssc0709_Meth_Bin003, Arc I group archaeon BMIXfssc0709_Meth_Bin006, Arc I group archaeon U1lsi0528_Bin055, Arc I group archaeon U1lsi0528_Bin089, C. Methanofastidiosum methylthiophilus, Ca. Methanofastidiosum methylthiophilus, Candidatus Methanofastidiosum methylthiophilus, WSA2 group archaeon U1lsi0528_Bin055, WSA2 group archaeon U1lsi0528_Bin089
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