SEI44942.1 protein (Azotobacter beijerinckii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEI44942.1

Anaerobic nitric oxide reductase transcription regulator. (514 aa)

Predicted Functional Partners:

SEI54740.1

0.914

SEJ41917.1

0.898

SEI37422.1

0.797

SEI44841.1

0.780

SEJ00158.1

0.778

SEI88869.1

0.775

SEJ38903.1

0.757

hmp

0.747

SEJ31843.1

0.708

SEI74587.1

0.706

Your Current Organism:

Azotobacter beijerinckii

NCBI taxonomy Id: 170623
Other names: A. beijerinckii, ATCC 19360, CIP 106282, DSM 378, JCM 20742, NCAIM B.01800, NRRL B-14367, NRRL B-14640

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEI37422.1	SEI44841.1	SAMN04244579_00038	SAMN04244579_00532	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Nitrogen fixation negative regulator NifL.	0.426
SEI37422.1	SEI44942.1	SAMN04244579_00038	SAMN04244579_00540	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Anaerobic nitric oxide reductase transcription regulator.	0.797
SEI37422.1	SEI54740.1	SAMN04244579_00038	SAMN04244579_01086	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Na+/proline symporter.	0.847
SEI37422.1	SEI88869.1	SAMN04244579_00038	SAMN04244579_02349	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PAS domain S-box-containing protein.	0.426
SEI37422.1	SEJ00158.1	SAMN04244579_00038	SAMN04244579_02752	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.417
SEI37422.1	SEJ31843.1	SAMN04244579_00038	SAMN04244579_03909	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.814
SEI37422.1	SEJ38903.1	SAMN04244579_00038	SAMN04244579_04173	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Regulatory protein, Fis family.	0.858
SEI37422.1	SEJ41917.1	SAMN04244579_00038	SAMN04244579_04281	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PAS domain S-box-containing protein.	0.834
SEI44841.1	SEI37422.1	SAMN04244579_00532	SAMN04244579_00038	Nitrogen fixation negative regulator NifL.	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.426
SEI44841.1	SEI44942.1	SAMN04244579_00532	SAMN04244579_00540	Nitrogen fixation negative regulator NifL.	Anaerobic nitric oxide reductase transcription regulator.	0.780
SEI44841.1	SEI54740.1	SAMN04244579_00532	SAMN04244579_01086	Nitrogen fixation negative regulator NifL.	Na+/proline symporter.	0.999
SEI44841.1	SEI74587.1	SAMN04244579_00532	SAMN04244579_01858	Nitrogen fixation negative regulator NifL.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.841
SEI44841.1	SEI88869.1	SAMN04244579_00532	SAMN04244579_02349	Nitrogen fixation negative regulator NifL.	PAS domain S-box-containing protein.	0.563
SEI44841.1	SEJ00158.1	SAMN04244579_00532	SAMN04244579_02752	Nitrogen fixation negative regulator NifL.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.947
SEI44841.1	SEJ31843.1	SAMN04244579_00532	SAMN04244579_03909	Nitrogen fixation negative regulator NifL.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.965
SEI44841.1	SEJ38903.1	SAMN04244579_00532	SAMN04244579_04173	Nitrogen fixation negative regulator NifL.	Regulatory protein, Fis family.	0.868
SEI44841.1	SEJ41917.1	SAMN04244579_00532	SAMN04244579_04281	Nitrogen fixation negative regulator NifL.	PAS domain S-box-containing protein.	0.999
SEI44841.1	hmp	SAMN04244579_00532	SAMN04244579_00541	Nitrogen fixation negative regulator NifL.	Nitric oxide dioxygenase; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.	0.644
SEI44942.1	SEI37422.1	SAMN04244579_00540	SAMN04244579_00038	Anaerobic nitric oxide reductase transcription regulator.	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.797
SEI44942.1	SEI44841.1	SAMN04244579_00540	SAMN04244579_00532	Anaerobic nitric oxide reductase transcription regulator.	Nitrogen fixation negative regulator NifL.	0.780