Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEI37713.1 | SEI45864.1 | SAMN04244579_00080 | SAMN04244579_00570 | 4-hydroxymandelate oxidase. | Glycolate oxidase. | 0.839 |
SEI37713.1 | SEI45875.1 | SAMN04244579_00080 | SAMN04244579_00571 | 4-hydroxymandelate oxidase. | Glycolate oxidase FAD binding subunit. | 0.747 |
SEI37713.1 | SEI45887.1 | SAMN04244579_00080 | SAMN04244579_00572 | 4-hydroxymandelate oxidase. | Glycolate oxidase iron-sulfur subunit. | 0.482 |
SEI37713.1 | SEJ21783.1 | SAMN04244579_00080 | SAMN04244579_03531 | 4-hydroxymandelate oxidase. | Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. | 0.611 |
SEI37713.1 | SEJ24850.1 | SAMN04244579_00080 | SAMN04244579_03653 | 4-hydroxymandelate oxidase. | Fe-S oxidoreductase. | 0.482 |
SEI37713.1 | glcB | SAMN04244579_00080 | SAMN04244579_00574 | 4-hydroxymandelate oxidase. | Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.665 |
SEI45864.1 | SEI37713.1 | SAMN04244579_00570 | SAMN04244579_00080 | Glycolate oxidase. | 4-hydroxymandelate oxidase. | 0.839 |
SEI45864.1 | SEI45875.1 | SAMN04244579_00570 | SAMN04244579_00571 | Glycolate oxidase. | Glycolate oxidase FAD binding subunit. | 0.997 |
SEI45864.1 | SEI45887.1 | SAMN04244579_00570 | SAMN04244579_00572 | Glycolate oxidase. | Glycolate oxidase iron-sulfur subunit. | 0.998 |
SEI45864.1 | SEI45900.1 | SAMN04244579_00570 | SAMN04244579_00573 | Glycolate oxidase. | Glc operon protein GlcG. | 0.948 |
SEI45864.1 | SEI78082.1 | SAMN04244579_00570 | SAMN04244579_01995 | Glycolate oxidase. | Glutamate synthase (NADPH) large subunit. | 0.809 |
SEI45864.1 | SEJ21783.1 | SAMN04244579_00570 | SAMN04244579_03531 | Glycolate oxidase. | Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. | 0.807 |
SEI45864.1 | SEJ24850.1 | SAMN04244579_00570 | SAMN04244579_03653 | Glycolate oxidase. | Fe-S oxidoreductase. | 0.952 |
SEI45864.1 | SEJ30792.1 | SAMN04244579_00570 | SAMN04244579_03874 | Glycolate oxidase. | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.881 |
SEI45864.1 | glcB | SAMN04244579_00570 | SAMN04244579_00574 | Glycolate oxidase. | Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.926 |
SEI45864.1 | nuoC | SAMN04244579_00570 | SAMN04244579_01274 | Glycolate oxidase. | NADH dehydrogenase subunit C /NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.847 |
SEI45875.1 | SEI37713.1 | SAMN04244579_00571 | SAMN04244579_00080 | Glycolate oxidase FAD binding subunit. | 4-hydroxymandelate oxidase. | 0.747 |
SEI45875.1 | SEI45864.1 | SAMN04244579_00571 | SAMN04244579_00570 | Glycolate oxidase FAD binding subunit. | Glycolate oxidase. | 0.997 |
SEI45875.1 | SEI45887.1 | SAMN04244579_00571 | SAMN04244579_00572 | Glycolate oxidase FAD binding subunit. | Glycolate oxidase iron-sulfur subunit. | 0.998 |
SEI45875.1 | SEI45900.1 | SAMN04244579_00571 | SAMN04244579_00573 | Glycolate oxidase FAD binding subunit. | Glc operon protein GlcG. | 0.958 |
page 1 of 4