STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI90574.1Bacteriophage holin Hol, superfamily III. (109 aa)    
Predicted Functional Partners:
SEI83229.1
Phage Tail Collar Domain.
  
  
 0.701
SEI83368.1
Hypothetical protein.
  
    0.618
SEJ62260.1
Hypothetical protein.
   
  
 0.613
SEI83346.1
Phage-related baseplate assembly protein.
  
    0.610
SEJ45348.1
Putative chitinase.
  
    0.602
SEI90428.1
Bacteriophage lambda head decoration protein D.
  
    0.593
SEI83320.1
Phage tail protein, P2 protein I family.
  
    0.504
SEI90526.1
Phage terminase, large subunit GpA.
  
    0.483
SEI83188.1
Hypothetical protein.
  
    0.475
SEI83602.1
P2-like prophage tail protein X.
   
    0.459
Your Current Organism:
Azotobacter beijerinckii
NCBI taxonomy Id: 170623
Other names: A. beijerinckii, ATCC 19360, CIP 106282, DSM 378, JCM 20742, NCAIM B.01800, NRRL B-14367, NRRL B-14640
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