SEJ04860.1 protein (Azotobacter beijerinckii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEJ04860.1

Putative membrane protein. (205 aa)

Predicted Functional Partners:

SEJ04845.1

0.972

SEJ04824.1

0.942

SEJ04798.1

0.498

SEJ04786.1

0.480

SEJ11893.1

0.457

SEJ04882.1

0.403

Your Current Organism:

Azotobacter beijerinckii

NCBI taxonomy Id: 170623
Other names: A. beijerinckii, ATCC 19360, CIP 106282, DSM 378, JCM 20742, NCAIM B.01800, NRRL B-14367, NRRL B-14640

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEJ04786.1	SEJ04798.1	SAMN04244579_02920	SAMN04244579_02921	Arsenite transporter, ACR3 family.	Arsenite efflux ATP-binding protein ArsA; Anion-transporting ATPase; Belongs to the arsA ATPase family.	0.827
SEJ04786.1	SEJ04824.1	SAMN04244579_02920	SAMN04244579_02922	Arsenite transporter, ACR3 family.	LemA protein.	0.504
SEJ04786.1	SEJ04845.1	SAMN04244579_02920	SAMN04244579_02923	Arsenite transporter, ACR3 family.	Uncharacterized protein.	0.504
SEJ04786.1	SEJ04860.1	SAMN04244579_02920	SAMN04244579_02924	Arsenite transporter, ACR3 family.	Putative membrane protein.	0.480
SEJ04798.1	SEJ04786.1	SAMN04244579_02921	SAMN04244579_02920	Arsenite efflux ATP-binding protein ArsA; Anion-transporting ATPase; Belongs to the arsA ATPase family.	Arsenite transporter, ACR3 family.	0.827
SEJ04798.1	SEJ04824.1	SAMN04244579_02921	SAMN04244579_02922	Arsenite efflux ATP-binding protein ArsA; Anion-transporting ATPase; Belongs to the arsA ATPase family.	LemA protein.	0.523
SEJ04798.1	SEJ04845.1	SAMN04244579_02921	SAMN04244579_02923	Arsenite efflux ATP-binding protein ArsA; Anion-transporting ATPase; Belongs to the arsA ATPase family.	Uncharacterized protein.	0.523
SEJ04798.1	SEJ04860.1	SAMN04244579_02921	SAMN04244579_02924	Arsenite efflux ATP-binding protein ArsA; Anion-transporting ATPase; Belongs to the arsA ATPase family.	Putative membrane protein.	0.498
SEJ04824.1	SEJ04786.1	SAMN04244579_02922	SAMN04244579_02920	LemA protein.	Arsenite transporter, ACR3 family.	0.504
SEJ04824.1	SEJ04798.1	SAMN04244579_02922	SAMN04244579_02921	LemA protein.	Arsenite efflux ATP-binding protein ArsA; Anion-transporting ATPase; Belongs to the arsA ATPase family.	0.523
SEJ04824.1	SEJ04845.1	SAMN04244579_02922	SAMN04244579_02923	LemA protein.	Uncharacterized protein.	0.963
SEJ04824.1	SEJ04860.1	SAMN04244579_02922	SAMN04244579_02924	LemA protein.	Putative membrane protein.	0.942
SEJ04845.1	SEJ04786.1	SAMN04244579_02923	SAMN04244579_02920	Uncharacterized protein.	Arsenite transporter, ACR3 family.	0.504
SEJ04845.1	SEJ04798.1	SAMN04244579_02923	SAMN04244579_02921	Uncharacterized protein.	Arsenite efflux ATP-binding protein ArsA; Anion-transporting ATPase; Belongs to the arsA ATPase family.	0.523
SEJ04845.1	SEJ04824.1	SAMN04244579_02923	SAMN04244579_02922	Uncharacterized protein.	LemA protein.	0.963
SEJ04845.1	SEJ04860.1	SAMN04244579_02923	SAMN04244579_02924	Uncharacterized protein.	Putative membrane protein.	0.972
SEJ04860.1	SEJ04786.1	SAMN04244579_02924	SAMN04244579_02920	Putative membrane protein.	Arsenite transporter, ACR3 family.	0.480
SEJ04860.1	SEJ04798.1	SAMN04244579_02924	SAMN04244579_02921	Putative membrane protein.	Arsenite efflux ATP-binding protein ArsA; Anion-transporting ATPase; Belongs to the arsA ATPase family.	0.498
SEJ04860.1	SEJ04824.1	SAMN04244579_02924	SAMN04244579_02922	Putative membrane protein.	LemA protein.	0.942
SEJ04860.1	SEJ04845.1	SAMN04244579_02924	SAMN04244579_02923	Putative membrane protein.	Uncharacterized protein.	0.972