STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ24376.1PIN domain nuclease, a component of toxin-antitoxin system (PIN domain). (125 aa)    
Predicted Functional Partners:
SEJ24356.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
    0.953
vapC
tRNA(fMet)-specific endonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
   
 0.596
SEJ24323.1
DNA (cytosine-5)-methyltransferase 1.
 
     0.517
SEJ50940.1
Hypothetical protein.
  
   
 0.493
SEJ41970.1
mRNA interferase HigB.
  
     0.480
SEJ55190.1
Hypothetical protein.
  
   
 0.473
SEI85576.1
mRNA interferase ChpB.
  
   
 0.472
SEJ24311.1
Hypothetical protein.
       0.419
SEJ24343.1
T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.419
Your Current Organism:
Azotobacter beijerinckii
NCBI taxonomy Id: 170623
Other names: A. beijerinckii, ATCC 19360, CIP 106282, DSM 378, JCM 20742, NCAIM B.01800, NRRL B-14367, NRRL B-14640
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