STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ46226.1AraC-type DNA-binding protein. (120 aa)    
Predicted Functional Partners:
SEJ41876.1
AraC-type DNA-binding protein.
  
     0.755
SEI78082.1
Glutamate synthase (NADPH) large subunit.
    
  0.740
SEI63929.1
AraC-type DNA-binding protein.
  
     0.728
SEJ47993.1
Transcriptional regulator, AraC family.
  
     0.715
SEI66457.1
Transcriptional regulator, AraC family.
  
   0.689
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.633
SEJ42152.1
Transcriptional regulator, AraC family.
  
     0.594
SEJ46237.1
Hypothetical protein.
 
     0.569
SEJ35863.1
Helix-turn-helix domain-containing protein.
  
     0.512
SEJ46267.1
Amidohydrolase family protein.
 
     0.508
Your Current Organism:
Azotobacter beijerinckii
NCBI taxonomy Id: 170623
Other names: A. beijerinckii, ATCC 19360, CIP 106282, DSM 378, JCM 20742, NCAIM B.01800, NRRL B-14367, NRRL B-14640
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