STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMX1ALIM homeobox transcription factor 1-alpha. (382 aa)    
Predicted Functional Partners:
FOXA2
Hepatocyte nuclear factor 3-beta.
    
 
 0.811
MSX1
Homeobox protein MSX-1.
    
 
 0.745
OTX2
Homeobox protein OTX2 isoform X1.
    
 
 0.719
LDB1
LIM domain-binding protein 1 isoform X1.
    
 0.712
TLX3
T-cell leukemia homeobox protein 3.
    
 
 0.709
SHH
Sonic hedgehog protein.
    
 
 0.681
WNT1
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
      
 0.678
TH
Tyrosine 3-monooxygenase.
      
 0.672
FGF8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.667
SLC6A3
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.634
Your Current Organism:
Neophocaena asiaeorientalis
NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.