STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALK96231.1Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)    
Predicted Functional Partners:
ALK98751.1
NADH-quinone oxidoreductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.749
ALK96232.1
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.723
rpsJ
30S ribosomal protein S10; NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.599
ALK95367.1
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.579
ALK95315.1
Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.568
ALK95369.1
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.566
ALK95361.1
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.563
ALK96228.1
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.557
ALK96230.1
Divalent metal cation transporter MntH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
sdhB
Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.501
Your Current Organism:
Massilia sp. WG5
NCBI taxonomy Id: 1707785
Other names: M. sp. WG5
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