STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALK98944.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)    
Predicted Functional Partners:
ALK98946.1
Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.809
ALK98945.1
Molybdenum cofactor biosynthesis protein MogA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
ALK97078.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.792
rpmG
50S ribosomal protein L33; In Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.781
ALK98947.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
ALK95358.1
50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.725
ALK95362.1
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.712
rpmF
Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.706
ALK98743.1
Iojap family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.700
obgE
ObgE; essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.677
Your Current Organism:
Massilia sp. WG5
NCBI taxonomy Id: 1707785
Other names: M. sp. WG5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.