Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| basA | fer | spr0285 | spr1458 | Gluthatione peroxidase; Belongs to the glutathione peroxidase family. | Ferredoxin. | 0.806 |
| basA | trkA | spr0285 | spr0071 | Gluthatione peroxidase; Belongs to the glutathione peroxidase family. | Trk transporter NAD+ binding protein - K+ transport. | 0.610 |
| cutC | mscL | spr1139 | spr0915 | Copper sensitivity; Participates in the control of copper homeostasis. Belongs to the CutC family. | Large conductance mechano-sensitive ion channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | 0.402 |
| cutC | trkA | spr1139 | spr0071 | Copper sensitivity; Participates in the control of copper homeostasis. Belongs to the CutC family. | Trk transporter NAD+ binding protein - K+ transport. | 0.480 |
| fer | basA | spr1458 | spr0285 | Ferredoxin. | Gluthatione peroxidase; Belongs to the glutathione peroxidase family. | 0.806 |
| fer | greA | spr1458 | spr1369 | Ferredoxin. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.647 |
| fer | trkA | spr1458 | spr0071 | Ferredoxin. | Trk transporter NAD+ binding protein - K+ transport. | 0.868 |
| greA | fer | spr1369 | spr1458 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Ferredoxin. | 0.647 |
| greA | sunL | spr1369 | spr1579 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | rRNA methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.518 |
| greA | trkA | spr1369 | spr0071 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Trk transporter NAD+ binding protein - K+ transport. | 0.443 |
| mscL | cutC | spr0915 | spr1139 | Large conductance mechano-sensitive ion channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | Copper sensitivity; Participates in the control of copper homeostasis. Belongs to the CutC family. | 0.402 |
| mscL | trkA | spr0915 | spr0071 | Large conductance mechano-sensitive ion channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | Trk transporter NAD+ binding protein - K+ transport. | 0.668 |
| purL | sunL | spr0046 | spr1579 | Phosphoribosylformylglycinamide synthetase. | rRNA methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.581 |
| purL | trkA | spr0046 | spr0071 | Phosphoribosylformylglycinamide synthetase. | Trk transporter NAD+ binding protein - K+ transport. | 0.471 |
| spr0069 | trkA | spr0069 | spr0071 | Hypothetical protein. | Trk transporter NAD+ binding protein - K+ transport. | 0.773 |
| spr0069 | trkH | spr0069 | spr0070 | Hypothetical protein. | Trk transporter membrane-spanning protein - K+ transport. | 0.773 |
| sunL | greA | spr1579 | spr1369 | rRNA methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.518 |
| sunL | purL | spr1579 | spr0046 | rRNA methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Phosphoribosylformylglycinamide synthetase. | 0.581 |
| sunL | trkA | spr1579 | spr0071 | rRNA methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Trk transporter NAD+ binding protein - K+ transport. | 0.603 |
| trkA | basA | spr0071 | spr0285 | Trk transporter NAD+ binding protein - K+ transport. | Gluthatione peroxidase; Belongs to the glutathione peroxidase family. | 0.610 |
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