Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABC-SBP-11 | hk13 | spr1645 | spr0464 | ABC transporter substrate-binding protein - unknown substrate. | Histidine kinase. | 0.539 |
ABC-SBP-11 | spr0223 | spr1645 | spr0223 | ABC transporter substrate-binding protein - unknown substrate. | ABC transporter solute-binding protein - iron transport, truncation. | 0.545 |
blpS | blpT | spr0462 | spr0461 | Regulatory protein. | Hypothetical protein. | 0.895 |
blpS | hk13 | spr0462 | spr0464 | Regulatory protein. | Histidine kinase. | 0.817 |
blpS | ip | spr0462 | spr0465 | Regulatory protein. | Bacteriocin-like peptide, double glycine cleavage type. | 0.591 |
blpS | rr13 | spr0462 | spr0463 | Regulatory protein. | Response regulator. | 0.954 |
blpT | blpS | spr0461 | spr0462 | Hypothetical protein. | Regulatory protein. | 0.895 |
blpT | hk13 | spr0461 | spr0464 | Hypothetical protein. | Histidine kinase. | 0.414 |
blpT | rr13 | spr0461 | spr0463 | Hypothetical protein. | Response regulator. | 0.905 |
comE | hk13 | spr2041 | spr0464 | Response regulator; Required for induction of competence. | Histidine kinase. | 0.872 |
hk13 | ABC-SBP-11 | spr0464 | spr1645 | Histidine kinase. | ABC transporter substrate-binding protein - unknown substrate. | 0.539 |
hk13 | blpS | spr0464 | spr0462 | Histidine kinase. | Regulatory protein. | 0.817 |
hk13 | blpT | spr0464 | spr0461 | Histidine kinase. | Hypothetical protein. | 0.414 |
hk13 | comE | spr0464 | spr2041 | Histidine kinase. | Response regulator; Required for induction of competence. | 0.872 |
hk13 | ip | spr0464 | spr0465 | Histidine kinase. | Bacteriocin-like peptide, double glycine cleavage type. | 0.902 |
hk13 | rr13 | spr0464 | spr0463 | Histidine kinase. | Response regulator. | 0.996 |
hk13 | spr0223 | spr0464 | spr0223 | Histidine kinase. | ABC transporter solute-binding protein - iron transport, truncation. | 0.465 |
hk13 | spr0224 | spr0464 | spr0224 | Histidine kinase. | ABC transporter substrate-binding protein - iron transport, truncation. | 0.465 |
hk13 | spr0611 | spr0464 | spr0611 | Histidine kinase. | Putative membrane spanning protein. | 0.447 |
hk13 | spr1658 | spr0464 | spr1658 | Histidine kinase. | Conserved hypothetical protein. | 0.537 |
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