Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spr0697Conserved hypothetical protein. (107 aa)    
Predicted Functional Partners:
spr0698
Conserved hypothetical protein.
 
  
 0.905
spr0699
Conserved hypothetical protein.
       0.752
fabG-2
3-Ketoacyl-ACP reductase.
     
 0.616
spr0700
Hypothetical protein.
       0.610
spr0702
Conserved hypothetical protein.
       0.531
spr0703
Hypothetical protein.
       0.531
spr0705
Conserved hypothetical protein.
  
    0.483
spr0704
Hypothetical protein.
       0.457
spr0088
Hypothetical protein.
 
  
 0.448
Your Current Organism:
Streptococcus pneumoniae
NCBI taxonomy Id: 171101
Other names: S. pneumoniae R6, Streptococcus pneumoniae (strain ATCC BAA-255 / R6), Streptococcus pneumoniae R6, Streptococcus pneumoniae str. R6
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