Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aguA | arcC | spr0822 | spr1958 | Conserved hypothetical protein. | Carbamate kinase; Belongs to the carbamate kinase family. | 0.532 |
aguA | but | spr0822 | spr0823 | Conserved hypothetical protein. | Beta-alanine synthase or beta-ureidopropionase. | 0.999 |
aguA | cad | spr0822 | spr0816 | Conserved hypothetical protein. | Lysine decarboxylase. | 0.506 |
aguA | metK | spr0822 | spr0671 | Conserved hypothetical protein. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.601 |
aguA | nspC | spr0822 | spr0821 | Conserved hypothetical protein. | Carboxynorspermidine decarboxylase. | 0.976 |
aguA | potA | spr0822 | spr1246 | Conserved hypothetical protein. | ABC transporter ATP-binding protein - spermidine/putrescine transport; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. | 0.576 |
aguA | potB | spr0822 | spr1245 | Conserved hypothetical protein. | ABC transporter membrane-spanning permease - spermidine/putrescine transport. | 0.479 |
aguA | potD | spr0822 | spr1243 | Conserved hypothetical protein. | ABC transporter substrate-binding protein - spermidine/putrescine transport. | 0.759 |
aguA | speE | spr0822 | spr0819 | Conserved hypothetical protein. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.977 |
aguA | spr0820 | spr0822 | spr0820 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.801 |
arcC | aguA | spr1958 | spr0822 | Carbamate kinase; Belongs to the carbamate kinase family. | Conserved hypothetical protein. | 0.532 |
but | aguA | spr0823 | spr0822 | Beta-alanine synthase or beta-ureidopropionase. | Conserved hypothetical protein. | 0.999 |
but | nspC | spr0823 | spr0821 | Beta-alanine synthase or beta-ureidopropionase. | Carboxynorspermidine decarboxylase. | 0.815 |
but | speE | spr0823 | spr0819 | Beta-alanine synthase or beta-ureidopropionase. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.983 |
but | spr0820 | spr0823 | spr0820 | Beta-alanine synthase or beta-ureidopropionase. | Conserved hypothetical protein. | 0.789 |
cad | aguA | spr0816 | spr0822 | Lysine decarboxylase. | Conserved hypothetical protein. | 0.506 |
cad | nspC | spr0816 | spr0821 | Lysine decarboxylase. | Carboxynorspermidine decarboxylase. | 0.617 |
cad | speE | spr0816 | spr0819 | Lysine decarboxylase. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.962 |
metK | aguA | spr0671 | spr0822 | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | Conserved hypothetical protein. | 0.601 |
metK | potA | spr0671 | spr1246 | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | ABC transporter ATP-binding protein - spermidine/putrescine transport; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. | 0.540 |
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