Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spr0986Degenerate transposase (orf2). (167 aa)    
Predicted Functional Partners:
IS1167-4
Transposase (orf1).
 
    0.919
IS1167-6
Transposase (orf1).
  
    0.782
IS1167-2
Transposase (orf1).
  
     0.774
spr0133
Degenerate transposase (orf2).
  
     0.774
IS1167-5
Transposase (orf1).
  
     0.774
spr1701
Degenerate transposase (orf1).
  
     0.774
IS1167-3
Transposase (orf1).
  
    0.773
spr0987
Degenerate transposase (orf2).
  
    0.664
Your Current Organism:
Streptococcus pneumoniae
NCBI taxonomy Id: 171101
Other names: S. pneumoniae R6, Streptococcus pneumoniae (strain ATCC BAA-255 / R6), Streptococcus pneumoniae R6, Streptococcus pneumoniae str. R6
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