Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ciaR | hk02 | spr0707 | spr1106 | Response regulator, transcriptional regulatory protein; Member of the two-component regulatory system CiaH/CiaR. Involved in early steps of competence regulation and in penicillin susceptibility. | Histidine kinase. | 0.817 |
ciaR | rr09 | spr0707 | spr0578 | Response regulator, transcriptional regulatory protein; Member of the two-component regulatory system CiaH/CiaR. Involved in early steps of competence regulation and in penicillin susceptibility. | Response regulator. | 0.502 |
hk02 | ciaR | spr1106 | spr0707 | Histidine kinase. | Response regulator, transcriptional regulatory protein; Member of the two-component regulatory system CiaH/CiaR. Involved in early steps of competence regulation and in penicillin susceptibility. | 0.817 |
hk02 | mutY | spr1106 | spr1108 | Histidine kinase. | Similar to A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.792 |
hk02 | phoP | spr1106 | spr1893 | Histidine kinase. | Response regulator. | 0.848 |
hk02 | rr01 | spr1106 | spr1474 | Histidine kinase. | Response regulator. | 0.760 |
hk02 | rr02 | spr1106 | spr1107 | Histidine kinase. | Response regulator. | 0.998 |
hk02 | rr06 | spr1106 | spr1998 | Histidine kinase. | Response regulator. | 0.906 |
hk02 | rr08 | spr1106 | spr0076 | Histidine kinase. | Response regulator. | 0.904 |
hk02 | rr09 | spr1106 | spr0578 | Histidine kinase. | Response regulator. | 0.931 |
hk02 | vicX | spr1106 | spr1105 | Histidine kinase. | VicX protein. | 0.916 |
hk02 | vncR | spr1106 | spr0528 | Histidine kinase. | VncR, response regulator. | 0.793 |
mutY | hk02 | spr1108 | spr1106 | Similar to A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Histidine kinase. | 0.792 |
mutY | rr02 | spr1108 | spr1107 | Similar to A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Response regulator. | 0.826 |
mutY | vicX | spr1108 | spr1105 | Similar to A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | VicX protein. | 0.803 |
phoP | hk02 | spr1893 | spr1106 | Response regulator. | Histidine kinase. | 0.848 |
rr01 | hk02 | spr1474 | spr1106 | Response regulator. | Histidine kinase. | 0.760 |
rr01 | rr06 | spr1474 | spr1998 | Response regulator. | Response regulator. | 0.407 |
rr01 | rr09 | spr1474 | spr0578 | Response regulator. | Response regulator. | 0.471 |
rr02 | hk02 | spr1107 | spr1106 | Response regulator. | Histidine kinase. | 0.998 |
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