Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
czcD | spr1671 | spr1672 | spr1671 | Cation diffusion facilitator transporter - heavy metal transport. | Conserved hypothetical protein; Similar to transcriptional regulator (MerR family). | 0.465 |
czcD | spr1673 | spr1672 | spr1673 | Cation diffusion facilitator transporter - heavy metal transport. | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | 0.587 |
pth | spr0653 | spr0005 | spr0653 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Conserved hypothetical protein; Probable transcriptional regulator. | 0.418 |
pth | spr1673 | spr0005 | spr1673 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | 0.418 |
pth | spr2040 | spr0005 | spr2040 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Conserved hypothetical protein; Probable transcriptional regulator of TetR family. | 0.458 |
spr0653 | pth | spr0653 | spr0005 | Conserved hypothetical protein; Probable transcriptional regulator. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.418 |
spr0653 | spr1673 | spr0653 | spr1673 | Conserved hypothetical protein; Probable transcriptional regulator. | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | 0.586 |
spr1671 | czcD | spr1671 | spr1672 | Conserved hypothetical protein; Similar to transcriptional regulator (MerR family). | Cation diffusion facilitator transporter - heavy metal transport. | 0.465 |
spr1671 | spr1673 | spr1671 | spr1673 | Conserved hypothetical protein; Similar to transcriptional regulator (MerR family). | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | 0.487 |
spr1673 | czcD | spr1673 | spr1672 | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | Cation diffusion facilitator transporter - heavy metal transport. | 0.587 |
spr1673 | pth | spr1673 | spr0005 | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.418 |
spr1673 | spr0653 | spr1673 | spr0653 | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | Conserved hypothetical protein; Probable transcriptional regulator. | 0.586 |
spr1673 | spr1671 | spr1673 | spr1671 | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | Conserved hypothetical protein; Similar to transcriptional regulator (MerR family). | 0.487 |
spr1673 | spr2040 | spr1673 | spr2040 | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | Conserved hypothetical protein; Probable transcriptional regulator of TetR family. | 0.736 |
spr2040 | pth | spr2040 | spr0005 | Conserved hypothetical protein; Probable transcriptional regulator of TetR family. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.458 |
spr2040 | spr1673 | spr2040 | spr1673 | Conserved hypothetical protein; Probable transcriptional regulator of TetR family. | Conserved hypothetical protein; Putative tetR-family transcriptional regulator. | 0.736 |