Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
alr | aspC-2 | spr1540 | spr1808 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Potential aminotransferase; See also SPR0035. | 0.822 |
aspC-2 | alr | spr1808 | spr1540 | Potential aminotransferase; See also SPR0035. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.822 |
aspC-2 | gdhA | spr1808 | spr1181 | Potential aminotransferase; See also SPR0035. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.913 |
aspC-2 | hemN | spr1808 | spr1266 | Potential aminotransferase; See also SPR0035. | Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.878 |
aspC-2 | ilvD | spr1808 | spr1935 | Potential aminotransferase; See also SPR0035. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.919 |
aspC-2 | ilvE | spr1808 | spr0758 | Potential aminotransferase; See also SPR0035. | Branched-chain-amino-acid transaminase. | 0.910 |
aspC-2 | pabB | spr1808 | spr0582 | Potential aminotransferase; See also SPR0035. | Para-aminobenzoate synthetase. | 0.480 |
aspC-2 | recD | spr1808 | spr0363 | Potential aminotransferase; See also SPR0035. | Exonuclease V; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. | 0.641 |
aspC-2 | rpmH | spr1808 | spr1807 | Potential aminotransferase; See also SPR0035. | 50S Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.510 |
aspC-2 | spr1809 | spr1808 | spr1809 | Potential aminotransferase; See also SPR0035. | Hypothetical protein. | 0.480 |
aspC-2 | spr1810 | spr1808 | spr1810 | Potential aminotransferase; See also SPR0035. | Conserved hypothetical protein. | 0.453 |
gdhA | aspC-2 | spr1181 | spr1808 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Potential aminotransferase; See also SPR0035. | 0.913 |
gdhA | pabB | spr1181 | spr0582 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Para-aminobenzoate synthetase. | 0.555 |
hemN | aspC-2 | spr1266 | spr1808 | Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Potential aminotransferase; See also SPR0035. | 0.878 |
ilvD | aspC-2 | spr1935 | spr1808 | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | Potential aminotransferase; See also SPR0035. | 0.919 |
ilvD | ilvE | spr1935 | spr0758 | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | Branched-chain-amino-acid transaminase. | 0.992 |
ilvD | pabB | spr1935 | spr0582 | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | Para-aminobenzoate synthetase. | 0.819 |
ilvE | aspC-2 | spr0758 | spr1808 | Branched-chain-amino-acid transaminase. | Potential aminotransferase; See also SPR0035. | 0.910 |
ilvE | ilvD | spr0758 | spr1935 | Branched-chain-amino-acid transaminase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.992 |
pabB | aspC-2 | spr0582 | spr1808 | Para-aminobenzoate synthetase. | Potential aminotransferase; See also SPR0035. | 0.480 |
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