Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Transposase_GTransposase, uncharacterized, truncation. (89 aa)    
Predicted Functional Partners:
spr1296
Hypothetical protein.
 
     0.851
spr0326
Hypothetical protein.
  
    0.782
spr0325
Hypothetical protein.
 
    0.744
spr1294
Hypothetical protein.
 
     0.707
spr0324
Transposase, uncharacterized, truncation.
  
   
0.680
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
   
    0.601
spr0466
Conserved hypothetical protein, truncation; blpB.
  
     0.524
spr2017
Degenerate transposase.
       0.524
spr0802
Hypothetical protein.
  
     0.523
spr0719
Transposase.
 
     0.477
Your Current Organism:
Streptococcus pneumoniae
NCBI taxonomy Id: 171101
Other names: S. pneumoniae R6, Streptococcus pneumoniae (strain ATCC BAA-255 / R6), Streptococcus pneumoniae R6, Streptococcus pneumoniae str. R6
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