STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39720.1Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)    
Predicted Functional Partners:
KJJ39721.1
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.994
KJJ39772.1
Quinol:cytochrome C oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.982
tuf
Elongation factor Tu; EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.982
KJJ39193.1
30S ribosomal protein S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.968
KJJ39713.1
Ribosome-recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.965
pyrH
Uridylate kinase; Catalyzes the phosphorylation of UMP to UDP; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.963
KJJ39722.1
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.952
KJJ39723.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.951
fusA
Elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.950
KJJ37725.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.949
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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