STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ40107.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (866 aa)    
Predicted Functional Partners:
KJJ39545.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
KJJ39811.1
UDP pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.969
KJJ39809.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.878
KJJ39810.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.862
KJJ39681.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.861
KJJ40063.1
VCBS repeat domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.861
KJJ39812.1
Inorganic polyphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.850
KJJ38609.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.760
KJJ38334.1
Zinc ribbon domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
KJJ37448.1
hydroxymyristoyl-ACP dehydratase; Catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.731
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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