STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39847.1(dimethylallyl)adenosine tRNA methylthiotransferase; Catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)    
Predicted Functional Partners:
KJJ39532.1
tRNA delta(2)-isopentenylpyrophosphate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.771
KJJ39846.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.709
KJJ37646.1
Mrp; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.646
KJJ37889.1
Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.604
KJJ39845.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.601
KJJ39984.1
50S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.582
KJJ38387.1
Polynucleotide phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.548
KJJ39843.1
Preprotein translocase subunit SecG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.528
KJJ39844.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
KJJ40109.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.