STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39848.1DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (838 aa)    
Predicted Functional Partners:
KJJ39453.1
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.959
KJJ38723.1
ATP-dependent DNA helicase RecQ; Functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.959
KJJ37607.1
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.959
KJJ39640.1
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.868
KJJ39725.1
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.847
KJJ39849.1
Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.844
KJJ39845.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.834
KJJ37740.1
leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.818
KJJ40129.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.802
KJJ40088.1
DNA processing protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.794
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.