Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJJ39903.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)    
Predicted Functional Partners:
KJJ39904.1
Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.960
KJJ39304.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.916
KJJ37679.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.895
KJJ38435.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.890
KJJ39214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.888
KJJ39213.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.878
KJJ39906.1
GreA/GreB family elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
KJJ40076.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.698
KJJ37652.1
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.696
KJJ39943.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.685
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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